Bio Assembly QC

Assemble genomes/metagenomes and produce assembly QC artifacts.

Instructions

Tool guides and versions: docs/README.md.

1. Validate the assembly manifest and inspect a restartable execution plan before starting expensive work:

   uv run --script skills/bio-assembly-qc/scripts/run_assembly_qc.py \
     assemblies.tsv --out results/bio-assembly-qc
   uv run --script skills/bio-assembly-qc/scripts/run_assembly_qc.py \
     assemblies.tsv --out results/bio-assembly-qc --execute