bio-binning-qc
Installation
SKILL.md
Bio Binning QC
Perform metagenomic binning, refinement, and QC with completeness/contamination checks.
Instructions
- Compute depth/coverage per sample.
- Run multiple binners (MetaBAT2, SemiBin2, QuickBin).
- Classify bins by domain (bacteria/archaea vs eukaryotes).
- Run domain-specific QC:
- CheckM2 for bacterial and archaeal bins
- EukCC for eukaryotic bins
- GUNC for contamination detection (all domains).
Quick Reference
| Task | Action |
|---|---|
| Run workflow | Follow the steps in this skill and capture outputs. |
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