bio-prefect-dask-nextflow
Installation
SKILL.md
Bio Prefect + Dask + Nextflow
Choose and scaffold the right workflow engine for local, distributed, or HPC bioinformatics pipelines.
Instructions
- Collect requirements (scheduler, container policy, data location, scale).
- Choose engine: Prefect+Dask, Nextflow, or Hybrid.
- Generate a runnable scaffold with clear data layout and resources.
- Validate with a small test and resume/retry checks.
Quick Reference
| Task | Action |
|---|---|
| Engine choice | See decision-matrix.md |
| Prefect+Dask scaffold | See prefect-dask.md |
| Prefect on Slurm | See prefect-hpc-slurm.md |
| Nextflow on HPC | See nextflow-hpc.md |
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