bio-protein-clustering-pangenome
Pass
Audited by Gen Agent Trust Hub on Oct 5, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill implements standard bioinformatics workflows using well-known tools (OrthoFinder, MMseqs2, ProteinOrtho). The included Python script
build_pangenome_artifacts.pyperforms data aggregation and matrix generation with strict input validation and no dangerous capabilities such as network access or dynamic code execution. - [EXTERNAL_DOWNLOADS]: The documentation references official repositories and release pages for bioinformatics tools on GitHub and GitLab. These sources are reputable and the instructions follow standard installation practices for the field.
- [INDIRECT_PROMPT_INJECTION]: While the skill ingests external data files (TSVs) which could theoretically contain malicious content, the processing logic is restricted to mathematical operations and structured file output. There is no interpolation of untrusted data into executable contexts or high-risk prompt segments.
Audit Metadata