bio-viromics
Installation
SKILL.md
Bio Viromics
Detect, classify, and QC viral contigs.
Instructions
- Run virus detection (geNomad).
- Run CheckV for completeness/contamination.
- Assign taxonomy and cluster genomes (vConTACT3 for hierarchical classification and gene-sharing network analysis).
Quick Reference
| Task | Action |
|---|---|
| Run workflow | Follow the steps in this skill and capture outputs. |
| Validate inputs | Confirm required inputs and reference data exist. |
| Review outputs | Inspect reports and QC gates before proceeding. |
| Tool docs | See docs/README.md. |
| References | - See ../bio-skills-references.md |
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