polars-dovmed

Search PubMed Central Open Access and bioRxiv parquet corpora with polars-dovmed.

Use the bundled helper, skills/polars-dovmed/scripts/query_literature.py, for hosted API or local parquet-backed searches. The helper auto-loads ~/.config/polars-dovmed/.env.

Run the helper with uv run --script so its pinned Parquet fallback dependency is available. Local runs record --corpus-revision (or DOVMED_CORPUS_REVISION) and fall back from flattened.csv to processed.parquet or the legacy prcoessed.parquet only when the compact output is absent.