The Agent Skills Directory

[SAFE]: The skill provides utility functions and documentation for processing paired-end FASTQ files, a common task in bioinformatics. The code uses the well-known and trusted Biopython library (biopython) for sequence parsing and manipulation.
[INDIRECT_PROMPT_INJECTION]: The skill handles external sequence files which could theoretically contain malicious instructions. However, the skill only performs structured parsing and statistical analysis using standard libraries, and does not expose high-risk capabilities like shell execution or network access.
Ingestion points: FASTQ files read via SeqIO.parse() in SKILL.md and examples/paired_end_io.py.
Boundary markers: None explicitly implemented; the skill relies on the FASTQ file format structure.
Capability inventory: File system read/write access via open() and Bio.SeqIO.write(). No subprocess, network, or dynamic execution capabilities.
Sanitization: Sequence data is parsed through the Bio.SeqIO validation logic which treats content as biological sequences (nucleotides/amino acids) rather than executable instructions.

bio-paired-end-fastq