bio-reaction-enumeration
Installation
SKILL.md
Version Compatibility
Reference examples tested with: RDKit 2024.03+
Before using code patterns, verify installed versions match. If versions differ:
- Python:
pip show <package>thenhelp(module.function)to check signatures
If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.
Reaction Enumeration
"Generate a combinatorial library from my building blocks" → Enumerate virtual compound libraries by applying reaction SMARTS transformations to sets of building-block molecules, producing and validating all product combinations for a defined synthetic route.
- Python:
AllChem.ReactionFromSmarts(),rxn.RunReactants()(RDKit)
Generate virtual compound libraries using reaction SMARTS.