protein-design-workflow
Pass
Audited by Gen Agent Trust Hub on Aug 27, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTIONINDIRECT_PROMPT_INJECTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill instructions include steps to download protein structure files from established scientific repositories, specifically files.rcsb.org and alphafold.ebi.ac.uk. These are well-known and trusted domains in the research community.
- [COMMAND_EXECUTION]: The workflow utilizes the modal CLI to execute bioinformatics tools such as RFdiffusion, ProteinMPNN, and ColabFold. This represents standard practice for managing high-performance computing tasks in protein science.
- [INDIRECT_PROMPT_INJECTION]: The skill establishes a data ingestion surface by processing external protein data files.
- Ingestion points: The skill downloads target structures from external URLs as defined in SKILL.md and references/standard-pipeline.md.
- Boundary markers: No explicit delimiters or instructions are provided to the agent regarding the content of the downloaded files.
- Capability inventory: The skill utilizes modal run for command execution in its workflow scripts.
- Sanitization: The skill performs no additional validation on the content of the structured PDB scientific data files.
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