Single-Cell Genomics and Expression Matrix Analysis

Comprehensive single-cell RNA-seq analysis and expression matrix processing using scanpy, anndata, scipy, and ToolUniverse. Designed for both full scRNA-seq workflows (raw counts to annotated cell types) and targeted expression-level analyses (per-cell-type DE, correlation, ANOVA, clustering).

IMPORTANT: This skill handles complex multi-workflow analysis. Most implementation details have been moved to references/ for progressive disclosure. This document focuses on high-level decision-making and workflow orchestration.

When to Use This Skill