scvi-tools Deep Learning & QC Skill

This skill provides guidance for deep learning-based single-cell analysis using scvi-tools and standard QC workflows.

Note: This skill utilizes the Bio-Informatics Pack. Scripts and references are located in: src-tauri/resources/packs/bio-informatics-pack/single-cell-analysis/

How to Use This Skill

1. Identify the appropriate workflow (QC or Modeling)
2. Use scripts in the pack's scripts/ folder
3. For installation or GPU issues, consult references/environment_setup.md in the pack

QC Workflow (Run First)

Before running any deep learning models, ensure data quality.