bio-single-cell-batch-integration
Version Compatibility
Reference examples tested with: anndata 0.10+, scanpy 1.10+, scikit-learn 1.4+, scvi-tools 1.1+
Before using code patterns, verify installed versions match. If versions differ:
- Python:
pip show <package>thenhelp(module.function)to check signatures - R:
packageVersion('<pkg>')then?function_nameto verify parameters
If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.
Batch Integration
Integrate multiple scRNA-seq datasets to remove batch effects while preserving biological variation.
Tool Comparison
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