gptomics/bioskills

231 skills959 total installs Github

Github

Github

Skill

Installs

bioskills

clawhub-installer

bio-data-visualization-multipanel-figures

bio-single-cell-batch-integration

bio-pathway-enrichment-visualization

bio-pathway-go-enrichment

bio-workflows-scrnaseq-pipeline

bio-workflows-rnaseq-to-de

bio-single-cell-multimodal-integration

bio-data-visualization-ggplot2-fundamentals

bio-data-visualization-genome-tracks

bio-data-visualization-heatmaps-clustering

bio-pathway-reactome

bio-pathway-kegg-pathways

bio-workflows-microbiome-pipeline

bio-data-visualization-circos-plots

bio-spatial-transcriptomics-spatial-communication

bio-single-cell-cell-communication

bio-single-cell-lineage-tracing

bio-epitranscriptomics-merip-preprocessing

bio-expression-matrix-metadata-joins

bio-rna-quantification-count-matrix-qc

bio-single-cell-markers-annotation

bio-single-cell-scatac-analysis

bio-single-cell-clustering

bio-spatial-transcriptomics-spatial-neighbors

bio-data-visualization-color-palettes

bio-single-cell-trajectory-inference

bio-single-cell-cell-annotation

bio-single-cell-perturb-seq

bio-data-visualization-specialized-omics-plots

bio-spatial-transcriptomics-image-analysis

bio-read-qc-fastp-workflow

bio-single-cell-doublet-detection

bio-single-cell-preprocessing

bio-single-cell-data-io

bio-metagenomics-kraken

bio-pathway-wikipathways

bio-pathway-gsea

bio-data-visualization-interactive-visualization

bio-spatial-transcriptomics-spatial-multiomics

bio-proteomics-dia-analysis

bio-proteomics-proteomics-qc

bio-microbiome-diversity-analysis

bio-workflows-genome-assembly-pipeline

bio-epitranscriptomics-m6a-peak-calling

bio-workflows-metagenomics-pipeline

bio-epitranscriptomics-modification-visualization

bio-rna-quantification-alignment-free-quant

bio-workflow-management-snakemake-workflows

bio-spatial-transcriptomics-spatial-data-io

bio-expression-matrix-counts-ingest

bio-workflows-expression-to-pathways

bio-differential-expression-batch-correction

bio-proteomics-quantification

bio-proteomics-spectral-libraries

bio-genome-intervals-gtf-gff-handling

bio-reporting-rmarkdown-reports

bio-expression-matrix-sparse-handling

bio-genome-assembly-contamination-detection

bio-spatial-transcriptomics-spatial-statistics

bio-workflow-management-cwl-workflows

bio-spatial-transcriptomics-spatial-domains

bio-atac-seq-footprinting

bio-differential-expression-timeseries-de

bio-spatial-transcriptomics-spatial-visualization

bio-spatial-transcriptomics-spatial-deconvolution

bio-spatial-transcriptomics-spatial-preprocessing

bio-atac-seq-atac-peak-calling

bio-expression-matrix-gene-id-mapping

bio-epitranscriptomics-m6a-differential

bio-methylation-bismark-alignment

bio-reporting-figure-export

bio-longread-alignment

bio-de-deseq2-basics

bio-de-visualization

bio-rnaseq-qc

bio-multi-omics-similarity-network

bio-workflows-gwas-pipeline

bio-chip-seq-super-enhancers

bio-clinical-databases-variant-prioritization

bio-proteomics-ptm-analysis

bio-population-genetics-plink-basics

bio-pdb-geometric-analysis

bio-epitranscriptomics-m6anet-analysis

bio-workflows-imc-pipeline

bio-workflows-tcr-pipeline

bio-multi-omics-data-harmonization

bio-metabolomics-xcms-preprocessing

bio-population-genetics-population-structure

bio-metabolomics-statistical-analysis

bio-read-alignment-bwa-alignment

bio-variant-calling-joint-calling

bio-read-qc-quality-filtering

bio-atac-seq-nucleosome-positioning

bio-imaging-mass-cytometry-cell-segmentation

bio-read-qc-adapter-trimming

bio-workflows-chipseq-pipeline

bio-proteomics-data-import

bio-genome-assembly-scaffolding

bio-workflow-management-nextflow-pipelines

bio-population-genetics-association-testing

bio-restriction-fragment-analysis

bio-proteomics-differential-abundance

bio-spatial-transcriptomics-spatial-proteomics

bio-population-genetics-linkage-disequilibrium

bio-workflows-metabolomics-pipeline

bio-long-read-sequencing-clair3-variants

bio-clip-seq-clip-peak-calling

bio-atac-seq-differential-accessibility

bio-read-qc-quality-reports

bio-population-genetics-scikit-allel-analysis

bio-methylation-dmr-detection

bio-methylation-methylkit

bio-read-alignment-star-alignment

bio-restriction-enzyme-selection

bio-atac-seq-motif-deviation

bio-workflows-multi-omics-pipeline

bio-metabolomics-metabolite-annotation

bio-workflows-multiome-pipeline

bio-phylo-tree-visualization

bio-imaging-mass-cytometry-phenotyping

bio-reporting-quarto-reports

bio-workflows-methylation-pipeline

bio-workflow-management-wdl-workflows

bio-structural-biology-modern-structure-prediction

bio-multi-omics-mofa-integration

bio-proteomics-protein-inference

bio-population-genetics-selection-statistics

bio-read-qc-umi-processing

bio-structural-biology-alphafold-predictions

bio-clinical-databases-dbsnp-queries

bio-proteomics-peptide-identification

bio-workflows-spatial-pipeline

bio-single-cell-metabolite-communication

bio-read-alignment-bowtie2-alignment

bio-read-qc-contamination-screening

bio-genome-intervals-bigwig-tracks

bio-metagenomics-amr-detection

bio-workflows-clip-pipeline

bio-read-alignment-hisat2-alignment

bio-rna-quantification-tximport-workflow

bio-multi-omics-mixomics-analysis

bio-restriction-sites

bio-methylation-calling

bio-de-edger-basics

bio-paired-end-fastq

bio-atac-seq-atac-qc

bio-format-conversion

bio-batch-processing

bio-vcf-statistics

bio-gatk-variant-calling

bio-bedgraph-handling

bio-alignment-pairwise

bio-restriction-mapping

bio-copy-number-gatk-cnv

bio-pdb-structure-io

bio-alignment-filtering

bio-entrez-link

bio-geo-data

bio-de-results

bio-longread-qc

bio-reporting-automated-qc-reports

bio-data-visualization-matplotlib-fundamentals

bio-reporting-jupyter-reports

bio-clinical-biostatistics-logistic-regression

bio-clinical-biostatistics-missing-data

bio-single-cell-differential-abundance

bio-clinical-biostatistics-survival-analysis

bio-single-cell-cnv-inference

bio-single-cell-hashing-demultiplexing

bio-data-visualization-upset-plots

bio-data-visualization-statistical-annotation

bio-experimental-design-multiple-testing

bio-differential-expression-de-results

bio-clinical-biostatistics-bayesian-trials

bio-data-visualization-genome-browser-tracks

bio-atac-seq-enhancer-gene-linking

bio-atac-seq-consensus-peakset

bio-atac-seq-deep-learning-atac

bio-workflows-biomarker-pipeline

bio-splicing-quantification

bio-machine-learning-prediction-explanation

bio-machine-learning-biomarker-discovery

bio-clinical-biostatistics-subgroup-analysis

bio-atac-seq-single-cell-atac

bio-clinical-biostatistics-adaptive-designs

bio-differential-expression-deseq2-basics

bio-clinical-biostatistics-power-sample-size

bio-reporting-publication-tables

bio-data-visualization-network-visualization

bio-data-visualization-oncoprint-mutation-matrices

bio-data-visualization-dimensionality-reduction-plots

bio-workflows-causal-genomics-pipeline

bio-data-visualization-flow-and-transition-plots

bio-expression-matrix-normalization

bio-splice-variant-prediction

bio-data-visualization-volcano-and-ma-plots

bio-machine-learning-omics-classifiers

bio-atac-seq-allele-specific-accessibility

bio-machine-learning-atlas-mapping

bio-data-visualization-manhattan-qq-locuszoom

bio-clinical-biostatistics-multiplicity-graphical

bio-gene-regulatory-networks-coexpression-networks

bio-outlier-splicing-detection

bio-data-visualization-sequence-logos

bio-data-visualization-distribution-plots

bio-differential-splicing

bio-spatial-transcriptomics-high-resolution-binning

bio-molecular-standardization

bio-data-visualization-forest-funnel-plots

bio-clinical-biostatistics-cdisc-data

bio-causal-genomics-mendelian-randomization

bio-differential-expression-de-visualization

bio-machine-learning-model-validation

bio-data-visualization-volcano-customization

bio-gene-regulatory-networks-scenic-regulons

bio-data-visualization-lollipop-protein-maps

bio-atac-seq-co-accessibility

bio-clinical-biostatistics-effect-measures

bio-clinical-biostatistics-trial-reporting

bio-differential-expression-edger-basics

bio-clinical-biostatistics-categorical-tests

bio-isoform-switching

bio-generative-design

bio-sashimi-plots

bio-similarity-searching

bio-single-cell-splicing

bio-scaffold-analysis

bio-reaction-enumeration

bio-splicing-qc