Cell Phenotyping for IMC

Load Single-Cell Data

import anndata as ad
import scanpy as sc
import pandas as pd
import numpy as np

# Load from h5ad
adata = ad.read_h5ad('imc_segmented.h5ad')

# Or create from CSVs
intensities = pd.read_csv('cell_intensities.csv')
cell_info = pd.read_csv('cell_info.csv')