bio-rnaseq-qc
RNA-seq Quality Control
RNA-seq specific QC metrics beyond general read quality.
rRNA Contamination Detection
High rRNA content indicates failed rRNA depletion or polyA selection.
SortMeRNA
sortmerna \
--ref rRNA_databases/smr_v4.3_default_db.fasta \
--reads sample.fastq.gz \
--aligned rRNA_reads \
--other non_rRNA_reads \
--fastx \
--threads 8
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Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
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