bio-alignment-pairwise
Installation
SKILL.md
Pairwise Sequence Alignment
Align two sequences using dynamic programming algorithms (Needleman-Wunsch for global, Smith-Waterman for local).
Required Import
from Bio.Align import PairwiseAligner
from Bio.Seq import Seq
from Bio import SeqIO
Core Concepts
| Mode | Algorithm | Use Case |
|---|---|---|
global |
Needleman-Wunsch | Full-length alignment, similar-length sequences |
local |
Smith-Waterman | Find best matching regions, different-length sequences |