Enrichment Visualization

Scope

This skill covers enrichplot package functions designed for clusterProfiler results:

• dotplot(), barplot() - Summary views
• cnetplot(), emapplot(), treeplot() - Network/hierarchical views
• gseaplot2(), ridgeplot() - GSEA-specific
• goplot(), heatplot(), upsetplot() - Specialized views

For custom ggplot2 enrichment dotplots (manual implementation), see data-visualization/specialized-omics-plots.

Setup

library(clusterProfiler)
library(enrichplot)
library(ggplot2)