Association Testing

GWAS analysis using PLINK 2.0's unified --glm command for case-control and quantitative traits.

PLINK 2.0 Association Testing

Basic Case-Control (Binary Phenotype)

# Basic logistic regression
plink2 --bfile data --glm --out results

# With phenotype file
plink2 --bfile data --pheno pheno.txt --glm --out results

Quantitative Trait (Continuous Phenotype)