AlphaFold Predictions

Download and analyze AlphaFold predicted protein structures from the AlphaFold Protein Structure Database.

Download Structures

Single Structure by UniProt ID

import requests

def download_alphafold(uniprot_id, output_dir='.'):
    '''Download AlphaFold structure for UniProt accession'''
    base_url = 'https://alphafold.ebi.ac.uk/files'
    pdb_url = f'{base_url}/AF-{uniprot_id}-F1-model_v4.pdb'
    cif_url = f'{base_url}/AF-{uniprot_id}-F1-model_v4.cif'