Spatial Cell-Cell Communication

Analyze ligand-receptor interactions and cell-cell communication in spatial data.

Required Imports

import squidpy as sq
import scanpy as sc
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt

Ligand-Receptor Analysis with Squidpy

# Requires clustered data with cell type annotations
adata = sc.read_h5ad('clustered_spatial.h5ad')