Version Compatibility

Reference examples tested with: matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scikit-learn 1.4+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Biomarker Discovery Pipeline

"Build a validated biomarker panel from my omics data" -> Orchestrate feature selection (Boruta/LASSO), nested cross-validation classifier training, and SHAP interpretation to produce a robust, validated biomarker signature.

Complete pipeline from expression data to validated biomarker panels with classifier.

Workflow Overview