bio-workflows-scrnaseq-pipeline
Single-Cell RNA-seq Pipeline
Complete workflow from 10X Genomics Cell Ranger output to annotated cell types.
Workflow Overview
10X data (filtered_feature_bc_matrix)
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[1. Load Data] ---------> Read10X / read_10x_h5
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[2. QC Filtering] ------> nFeature, percent.mt, doublets
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[3. Normalization] -----> SCTransform or LogNormalize
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