Version Compatibility

Reference examples tested with: ggsashimi 1.1+, rmats2sashimiplot 3.0+, MAJIQ 3.0+, leafcutter 0.2.9+, pyGenomeTracks 3.8+, ggplot2 3.5+, pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Sashimi Plot Visualization

Visualize RNA-seq coverage tracks with splice junction arcs labeled by read count. Sashimi plots originated with MISO (Katz 2010 Nat Methods); modern tools differ in input handling, group aggregation logic, and customization. Tool choice is not interchangeable — some tools work only with specific upstream output formats.

Tool Selection Matrix