bio-single-cell-multimodal-integration
Installation
SKILL.md
Multimodal Integration
Analyze multi-modal single-cell data where multiple measurements are made per cell.
Common Modalities
| Technology | Modalities | Package |
|---|---|---|
| CITE-seq | RNA + surface proteins (ADT) | Seurat |
| 10X Multiome | RNA + ATAC | Seurat, Signac, ArchR |
| SHARE-seq | RNA + ATAC | Seurat, Signac |
| Spatial (Visium) | RNA + spatial coordinates | Seurat, Squidpy |
CITE-seq Analysis (Seurat)
Load Data
library(Seurat)