bio-vcf-statistics
Installation
SKILL.md
VCF Statistics
Generate statistics and quality metrics using bcftools.
Statistics Tools
| Command | Purpose |
|---|---|
bcftools stats |
Comprehensive variant statistics |
bcftools gtcheck |
Sample concordance and relatedness |
bcftools query |
Custom summaries |
bcftools stats
Basic Statistics
bcftools stats input.vcf.gz > stats.txt