bio-workflows-genome-assembly-pipeline
Genome Assembly Pipeline
Complete workflow from sequencing reads to polished, quality-assessed genome assembly.
Workflow Overview
Reads (short and/or long)
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[1. QC & Filtering] -----> fastp, NanoPlot
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[2. Assembly] -----------> SPAdes (short) or Flye (long)
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[3. Polishing] ----------> Pilon (short) or medaka (long)
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