DESeq2 Basics

Differential expression analysis using DESeq2 for RNA-seq count data.

Required Libraries

library(DESeq2)
library(apeglm)  # For lfcShrink with type='apeglm'

Installation

if (!require('BiocManager', quietly = TRUE))
    install.packages('BiocManager')
BiocManager::install('DESeq2')
BiocManager::install('apeglm')