Version Compatibility

Reference examples tested with: clusterProfiler 4.10+, ggplot2 3.5+, scanpy 1.10+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Multi-omics Integration Pipeline

"Integrate my multi-omics datasets" -> Orchestrate data harmonization, MOFA+ factor analysis, mixOmics multivariate integration, similarity network fusion, and joint pathway interpretation across transcriptomics, proteomics, metabolomics, or other modalities.

Pipeline Overview