The Agent Skills Directory

[COMMAND_EXECUTION]: The script annotate_from_stem.py uses subprocess.run to execute a local module extractor.pipeline.tools.render_annotated_pdf. This is a controlled execution of an internal tool based on fixed paths.\n- [SAFE]: The skill reads run data and PDFs from specific local filesystem paths defined in the environment or relative to the skill directory. These operations are transparent and necessary for the tool's function.\n- [SAFE]: No obfuscation, malicious persistence, or data exfiltration attempts were identified.

create-annotated-pdf