The Agent Skills Directory

[SAFE]: The skill is a high-utility orchestrator for academic workflows. It includes extensive documentation on its state machine, integrity protocols, and reproducibility standards, all of which prioritize data correctness and user control.
[COMMAND_EXECUTION]: Dispatches tasks to legitimate document processing utilities including pandoc (for Markdown to DOCX/MD conversion) and tectonic (for LaTeX to PDF compilation). It also executes local helper scripts (e.g., scripts/run_codex_audit.sh, scripts/check_literature_corpus_schema.py) to manage the workflow.
[EXTERNAL_DOWNLOADS]: Interacts with the Semantic Scholar API and performs WebSearch operations to verify citations and academic claims. These operations are strictly scoped to the agent's primary purpose of academic integrity verification.
[INDIRECT_PROMPT_INJECTION]:
Ingestion points: The agent processes untrusted data from literature corpora (via YAML Material Passports) and human reviewer feedback (text/PDF/DOCX).
Boundary markers: Employs strict schema validation (JCS serialization) and 12-character hex hashes to verify state boundaries during cross-session resumes.
Capability inventory: Capabilities include file system manipulation (advisory locking via fcntl), subprocess execution for academic tooling, and targeted network access.
Sanitization: Incorporates a mandatory 5-phase integrity protocol (Stages 2.5 and 4.5) that uses automated cross-referencing to detect and block hallucinated content before it reaches the agent or the final output.

academic-pipeline