bcftools-variant-manipulation
Pass
Audited by Gen Agent Trust Hub on May 11, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: No malicious patterns detected. The skill instructions focus on legitimate bioinformatics workflows using the bcftools suite.
- [EXTERNAL_DOWNLOADS]: The documentation suggests installing bcftools via Bioconda or Homebrew. These are well-known, established package repositories for scientific and general software respectively.
- [COMMAND_EXECUTION]: Provides examples of standard shell commands and piping for genomic data processing. All commands are specific to the functional purpose of the tool and do not involve suspicious execution of untrusted code.
- [INDIRECT_PROMPT_INJECTION]: The skill describes tools that ingest external genomic data (VCF/BCF files).
- Ingestion points: Data enters the environment via files processed by bcftools query, view, and annotate commands.
- Boundary markers: Not applicable to these command examples.
- Capability inventory: Shell execution is limited to specific bcftools and samtools binary operations for data transformation.
- Sanitization: The skill involves structured data transformation; no evidence of processing untrusted data as executable instructions was found.
Audit Metadata