Skills
skills/jaechang-hits/sciagent-skills/cnvkit-copy-number/Gen Agent Trust Hub

cnvkit-copy-number

Pass

Audited by Gen Agent Trust Hub on May 11, 2026

Risk Level: SAFE
Full Analysis
  • [SAFE]: Software installation instructions utilize well-known and trusted package managers including Conda (via Bioconda), Pip (PyPI), and BiocManager (Bioconductor).
  • [SAFE]: Command execution is limited to the documented bioinformatics utility cnvkit.py and standard data processing tools like samtools.
  • [SAFE]: Python code examples use the subprocess module to orchestrate tool execution, which is a common and appropriate pattern for bioinformatics pipelines.
  • [SAFE]: External links and data sources point to authoritative scientific repositories such as the UCSC Genome Browser and the official CNVkit documentation on ReadTheDocs.
Audit Metadata
Risk Level
SAFE
Analyzed
May 11, 2026, 06:04 AM