deseq2-differential-expression
Pass
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill facilitates the installation of R packages from official and trusted repositories such as Bioconductor and CRAN using
BiocManager::install()andinstall.packages(). This is standard practice for setting up an R-based bioinformatics environment. - [SAFE]: The skill utilizes the
tximetapackage to retrieve transcript metadata from Ensembl, which is a well-recognized and trusted public database in the genomics community. - [SAFE]: The skill performs standard file system operations, including reading experimental count data and writing analysis results (CSV tables and PDF plots). These operations are restricted to relevant data directories and are consistent with its primary purpose of data analysis.
Audit Metadata