The Agent Skills Directory

[SAFE]: The skill provides documentation and examples for the ETE Toolkit, a standard open-source library for phylogenetic analysis. All described behaviors align with the primary purpose of tree parsing and visualization.
[EXTERNAL_DOWNLOADS]: The skill documents that the NCBITaxa module downloads a taxonomy database from NCBI (~50 MB) upon first initialization. This is an expected and legitimate operation for a bioinformatics tool fetching data from a well-known scientific service.
[COMMAND_EXECUTION]: The documentation includes standard commands for environment setup, such as pip install for Python dependencies and apt-get install for system-level rendering requirements (xvfb). These are instructional and intended for user-driven configuration.
[DATA_EXPOSURE]: The skill demonstrates reading and writing local tree files (e.g., .nwk, .xml) and metadata (CSV). These file operations are restricted to the user's local workspace and are necessary for the tool's functionality.

etetoolkit