fastp-fastq-preprocessing
Pass
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTIONINDIRECT_PROMPT_INJECTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill provides instructions to download the pre-compiled fastp binary directly from the official OpenGene GitHub repository using
wget. - [COMMAND_EXECUTION]: Includes commands to make the downloaded binary executable via
chmod +xand executes it directly from the local directory. This is standard practice for bioinformatics tools distributed as standalone binaries. - [INDIRECT_PROMPT_INJECTION]: The skill utilizes Python scripts to parse JSON QC reports generated by fastp. While this involves processing external tool output, the data ingested (genomic quality metrics) does not pose a security risk in this context.
Audit Metadata