gatk-variant-calling
Pass
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill downloads the GATK4 toolkit from the official Broad Institute GitHub repository (
github.com/broadinstitute/gatk). This is a standard and safe operation for setting up the required bioinformatics environment. - [COMMAND_EXECUTION]: The skill contains several shell commands for running GATK, samtools, and bcftools. These are essential for the stated purpose of processing genomic data and do not include any suspicious or obfuscated execution patterns.
- [REMOTE_CODE_EXECUTION]: While the skill downloads and executes GATK, the source (Broad Institute) is a well-known and trusted authority in the genomics field. The download is versioned and target-specific, representing a standard software installation workflow.
Audit Metadata