molecular-visualization-3dmol

Installation
SKILL.md

3Dmol.js molecular visualization

Overview

3Dmol.js is a WebGL molecular viewer that runs entirely in the browser. This skill emits self-contained HTML files that load 3Dmol from a CDN and render a structure, a trajectory, or a vibrational mode — no server, no build step, no Python runtime to view. The bundled scripts/mol_viewer.py generates that HTML from any .xyz/.trj/.pdb/.sdf/.mol2/.cube file; the Core API below shows the underlying 3Dmol.js calls so you can hand-write or customize a viewer.

When to Use

Installs
5
GitHub Stars
365
First Seen
Aug 27, 2026
molecular-visualization-3dmol — jaechang-hits/sciagent-skills