prokka-genome-annotation
Pass
Audited by Gen Agent Trust Hub on Mar 16, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill specifies installation of bioinformatics software (Prokka) and Python libraries (BioPython, Pandas, Matplotlib) via standard package managers (Conda, Mamba, and Pip) from reputable sources like Bioconda and PyPI.- [COMMAND_EXECUTION]: The workflow involves executing the Prokka pipeline and shell commands (awk, grep) for file manipulation. The provided code includes a header-cleaning step for genomic data, which effectively mitigates risks associated with processing malformed external input.
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