samtools-bam-processing
Pass
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill provides standard documentation and command-line examples for samtools, an industry-standard tool for SAM/BAM/CRAM processing in bioinformatics.
- [SAFE]: External references point to reputable sources, including official documentation at htslib.org, the official samtools GitHub repository, and peer-reviewed scientific journals (GigaScience).
- [SAFE]: Installation instructions utilize well-known and trusted package managers (Conda via Bioconda and Homebrew) to manage tool deployment.
- [SAFE]: No evidence of prompt injection, data exfiltration, obfuscation, or persistence mechanisms was found. The bash scripts provided are transparent and follow best practices for genomic data processing, such as cleanup of intermediate files.
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