The Agent Skills Directory

[SAFE]: Analysis of the skill instructions and code examples for the Snakemake workflow engine revealed no malicious patterns, prompt injections, or unauthorized data exfiltration attempts. The content is purely instructional.- [COMMAND_EXECUTION]: The skill documents the use of shell: and run: blocks within Snakemake rules. These are core features of the tool designed to orchestrate command-line utilities and Python scripts. The examples provided are standard for scientific data processing (e.g., using bwa and samtools) and are used in an instructional context.- [EXTERNAL_DOWNLOADS]: The skill contains a documentation example demonstrating how to download reference data using wget from a placeholder URL (example.com). This is a safe and standard pattern for documenting data acquisition in workflow pipelines.

snakemake-workflow-engine