star-rna-seq-aligner
Pass
Audited by Gen Agent Trust Hub on Oct 14, 2026
Risk Level: SAFE
Full Analysis
- [EXTERNAL_DOWNLOADS]: Fetches genome and annotation data from the European Bioinformatics Institute (EBI) FTP server (
ftp.ebi.ac.uk), which is a trusted, well-known biological data repository. - [EXTERNAL_DOWNLOADS]: References the official STAR GitHub repository (
github.com/alexdobin/STAR) for source code installation. - [COMMAND_EXECUTION]: Contains standard bioinformatics command-line operations for
STAR,samtools,conda, and shell scripting for batch processing. These are aligned with the skill's stated purpose of RNA-seq analysis. - [DYNAMIC_EXECUTION]: Uses Python via heredocs (`python3
- << 'EOF'`) to parse local alignment logs and process gene count tables. The scripts handle local file data and do not involve network operations or untrusted input interpolation.
Audit Metadata