cobrapy-metabolic-modeling
Pass
Audited by Gen Agent Trust Hub on Jul 10, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill facilitates genome-scale metabolic modeling using the well-established scientific library COBRApy (
cobra). All documented functionality, including optimization (FBA, FVA), gene deletion screens, and SBML model I/O, is standard for this scientific domain. - [EXTERNAL_DOWNLOADS]: The skill recommends installing standard, well-known scientific packages such as
cobra,numpy, andpandasvia pip. It also mentions industry-standard solvers like CPLEX and Gurobi, which are typical for high-performance optimization tasks. - [DATA_EXPOSURE]: The skill handles metabolic model data in standard formats (SBML, JSON, YAML). File operations are limited to reading and writing these specific model files within the user's workspace, representing normal tool behavior for researchers.
- [PROMPT_INJECTION]: No instructional overrides, role-play injections, or attempts to bypass agent safety filters were identified in the skill instructions or metadata.
- [COMMAND_EXECUTION]: Shell commands are restricted to standard package installation (
pip install) and do not involve piped remote execution from untrusted sources.
Audit Metadata