The Agent Skills Directory

[COMMAND_EXECUTION]: The skill provides standard shell commands for bioinformatics workflows, including tools like macs3, samtools, and bedGraphToBigWig. These commands are used to process local genomic alignment files (BAM) and generate peak calls or signal tracks.
[EXTERNAL_DOWNLOADS]: The skill recommends installing the macs3 and idr packages using standard package managers like pip and conda. These are well-established scientific software packages hosted on official registries (PyPI, Bioconda).
[SAFE]: No malicious patterns, such as prompt injection, obfuscation, credential theft, or unauthorized network operations, were found. The skill's logic and commands are consistent with its primary purpose of genomic analysis.

macs3-peak-calling