scgpt
Installation
SKILL.md
scGPT — Single-Cell Foundation Model
Prerequisites
| Requirement | Minimum | Recommended |
|---|---|---|
| Python | 3.10+ | 3.11 |
| CUDA | 12.1+ | 12.4+ |
| GPU VRAM | 16 GB | 24 GB+ |
How to run
Loading the vocabulary and checkpoint
scGPT checkpoints are raw directories (args.json, best_model.pt,
vocab.json) — not Hugging Face hub repos. Point at the directory, not an HF
repo id.