bulk-rnaseq
Pass
Audited by Gen Agent Trust Hub on May 28, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill directs the user to install standard bioinformatics packages such as 'pytximport', 'pandas', 'pydeseq2', 'gseapy', and 'gprofiler-official' using package managers. It also references the 'nf-core/rnaseq' Nextflow pipeline, which is a community-standard resource for transcriptomics.\n- [COMMAND_EXECUTION]: The workflow involves executing common command-line tools for sequence analysis, including 'FastQC', 'fastp', 'Trim Galore', 'STAR', and 'Salmon'. These operations are typical for the skill's stated purpose and are documented neutrally.\n- [SAFE]: No indicators of malicious activity, such as credential theft, data exfiltration, or obfuscation, were detected. The skill emphasizes reproducibility through tool version pinning and includes validation scripts for processing user-supplied data.
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