The Agent Skills Directory

[COMMAND_EXECUTION]: The script scripts/generate_schematic.py utilizes the subprocess module to execute its helper script scripts/generate_schematic_ai.py. This is an internal execution pattern used to orchestrate the iterative AI generation and review process for scientific diagrams.
[EXTERNAL_DOWNLOADS]: The scripts/generate_schematic_ai.py script performs outbound network requests to openrouter.ai (a well-known LLM gateway) to utilize the Gemini 3.1 Pro and Flash models for image generation and quality review. This functionality is documented and requires a user-supplied API key.
[DATA_EXFILTRATION]: While the figure generation tool sends prompts to an external API, the skill provides extensive documentation and automated scripts (scripts/check_deidentification.py) specifically designed to help users remove sensitive HIPAA identifiers before processing data.
[SAFE]: The Python scripts included in the skill primarily focus on regex-based text validation and structured data extraction (e.g., scripts/extract_clinical_data.py), which are performed locally without executing or evaluating the content of the clinical reports.

clinical-reports