DNAnexus Integration

Purpose

Use this skill to build, run, and operate DNAnexus workloads without guessing at platform semantics. It covers:

• dx CLI and dxpy automation
• Files, records, folders, projects, and metadata
• Apps and applets defined by dxapp.json
• Jobs, workflow analyses, retries, monitoring, and cost controls
• Native workflows, WDL/CWL through dxCompiler, and Nextflow imports

The documented baseline was verified on 2026-07-23 against dxpy==0.410.0, dxCompiler 2.17.0, and the 2026 DNAnexus documentation. Consult references/sources.md and current release notes when behavior may have changed.

Operating Contract