LaminDB

Overview

LaminDB is an open-source, lineage-native lakehouse for biology. It makes datasets and models queryable, traceable, validated, reproducible, and FAIR (Findable, Accessible, Interoperable, Reusable) while storing data in open formats across local filesystems, S3, GCS, Hugging Face, SQLite, and Postgres.

Core Value Proposition:

• Queryability: Search and filter artifacts, records, runs, features, schemas, and collections
• Traceability: Track inputs, outputs, parameters, source code, and environments for notebooks, scripts, functions, and pipelines
• Validation: Curate DataFrame, AnnData, SpatialData, TileDB-SOMA, Parquet, Zarr, and other biological formats with schemas
• FAIR Compliance: Standardize annotations with Bionty-backed ontologies and custom registries
• Change management: Organize work with projects, branches, spaces, collections, and saved notes or plans

When to Use This Skill

Use this skill when: