pyopenms
Pass
Audited by Gen Agent Trust Hub on Oct 24, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTION
Full Analysis
- [SAFE]: The skill is a domain-specific scientific utility designed for mass spectrometry analysis. The included Python scripts are well-structured, parameterized CLI tools that use standard libraries (pyOpenMS, pandas, numpy, matplotlib) to process scientific data.
- [EXTERNAL_DOWNLOADS]: The skill references arxiv.org for the purpose of retrieving accurate citation metadata. ArXiv is a well-known and trusted service for scientific preprints, and this usage is standard for research-oriented tools.
- [INDIRECT_PROMPT_INJECTION]: The skill ingests mass spectrometry data files such as mzML and FASTA. This represents an attack surface for indirect prompt injection; however, the risk is minimized as these files are parsed by the specialized pyOpenMS library rather than being treated as instructions by the agent.
- [COMMAND_EXECUTION]: The skill uses the Bash tool for standard installation and execution commands. All shell operations are routine for setting up a Python environment and running processing scripts.
Audit Metadata