pyopenms
Pass
Audited by Gen Agent Trust Hub on May 4, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill is a well-structured technical guide for computational mass spectrometry using the OpenMS framework. The instructions and code examples provided are consistent with scientific data processing best practices.
- [EXTERNAL_DOWNLOADS]: The skill references official documentation (pyopenms.readthedocs.io, openms.org) and the project's official GitHub repository. These sources are established for the bioinformatics community and are used for documentation and library installation via standard package managers.
- [COMMAND_EXECUTION]: Shell commands are restricted to the installation and verification of the 'pyopenms' package using the 'uv' and 'pip' package managers. No unauthorized or suspicious command-line operations were found.
- [DATA_EXFILTRATION]: File operations (reading mzML, FASTA, and idXML files) are local and aligned with the primary purpose of proteomics and metabolomics analysis. There is no evidence of sensitive data being accessed or transmitted to external servers.
- [PROMPT_INJECTION]: The instructional content is professional and technical. It contains no attempts to bypass safety filters, override agent instructions, or extract system prompts.
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