The Agent Skills Directory

[COMMAND_EXECUTION]: The skill executes a local Python script scripts/rna_velocity_workflow.py to process biological data. This is a standard function necessary for the skill's intended purpose.
[EXTERNAL_DOWNLOADS]: The skill provides instructions for installing dependencies using standard package managers. The packages (including scvelo, scanpy, and anndata) are well-known, version-pinned scientific libraries from trusted public registries.
[INDIRECT_PROMPT_INJECTION]: The skill ingests data from external biological data files (.h5ad, .loom), representing a data ingestion surface.
Ingestion points: The script scripts/rna_velocity_workflow.py reads local files using established scientific library functions anndata.read_h5ad and anndata.io.read_loom.
Boundary markers: Not applicable, as the data consists of numerical matrices and metadata rather than natural language instructions intended for the agent.
Capability inventory: The skill possesses local file system access and utilizes numerical analysis workflows.
Sanitization: The validate_layers function performs input validation, checking for unique identifiers and the presence of finite, non-negative numerical values.

scvelo